Benchmark Genetics have joined forces with the Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australia’s national science agency, to develop a new single nucleotide polymorphism (SNP) array for breeding Australia’s native and endemic species.
The collaboration brings together Benchmark Genetics’ scientific and innovation capabilities with CSIRO’s long-standing research and expertise, aiming to accelerate genetic improvement across both established and emerging aquaculture species, supporting productivity and sustainable growth in the sector.
The collaboration has resulted in AusAQUA, a high-throughput Axiom genotyping chip designed to advance the breeding of Australia’s key aquaculture species. The platform features SNP panels for Murray cod (Maccullochella peelii), Sydney rock oyster (Saccostrea glomerata), Jade perch (Scortum barcoo) and Pompano (Trachinotus anak), species that previously had no dedicated genotyping tools. This new platform is complementary to the existing Benchmark Genetics SNP panel for barramundi (Lates calcarifer), expanding the suite of genomic tools available to support Australian aquaculture.
By enabling precise genetic analysis, the chip allows breeders to efficiently identify and select animals with desirable traits, manage pedigree records, and monitor the genetic health of their populations, including genetic diversity and inbreeding. Managed and operated by Benchmark Genetics, AusAQUA provides fast, reliable, and actionable data to support selective breeding programs for these species.
Dr. Ross Houston, CSO of Benchmark Genetics said, “Our collaboration with CSIRO is a testament to the value of combining world-class research with applied breeding programs. Together, we can design solutions that deliver faster genetic gains, more sustainable practices, and cost-effective solutions that meet the evolving needs of the industry.”
Dr. James Kijas, Group Leader at CSIRO, added:“ The development of the AusAQUA array captured a powerful synergy between scientific expertise and industry leadership. By working together, we can accelerate the development and application of innovative genetic tools that will not only advance specific breeding programs for particular species but also benefit the aquaculture sector more broadly.”
The AusAQUA array represents an important step forward in genotyping capabilities and reflects Australia’s ongoing investment in strengthening its aquaculture sector through science and international collaboration. This partnership brings together industry expertise to support continued innovation across the sector, and Benchmark Genetics is pleased to contribute to the long-term development of Australian aquaculture.
